Bone marrow or stem cell transplants

A stem cell transplant is sometimes called a bone marrow transplant (BMT). This is because traditionally the stem cells were obtained from bone marrow, but now we can obtain them from other sources within the body.

What are stem cells?

Bone marrow is a spongy material that’s found inside some of our hollow bones. Stem cells are produced in the bone marrow. These are cells in their earliest stage of development. They will eventually become red blood cells, white blood cells and platelets. When the cells are fully mature, they are released into the bloodstream.

Why have a stem cell transplant?

Your child may need a stem cell transplant because:

  • their own bone marrow cells are diseased, for example, in leukaemia
  • their bone marrow is not working properly, for example, in aplastic anaemia or thalassaemia
  • their bone marrow is suppressed, for example, after chemotherapy or radiotherapy
  • their immune system is not working properly, for example, in combined immune deficiency

A stem cell transplant is used as part of standard treatment for some cancers in children and young people. It is also used as a treatment for relapsed disease. A stem cell transplant (sometimes called a bone marrow transplant) allows your child to have much higher doses of chemotherapy than usual. This can improve the chance of curing their cancer but has more side effects.

What is a stem cell transplant?

During a stem cell transplant (SCT), new healthy stem cells are put into the bloodstream. These new cells attach to the bone marrow and start to make new healthy blood cells.

There are two different types of transplants. The type of transplant recommended will depend on your child's disease type and treatment plan.

  • Autologous: this uses your child’s own stem cells. The stem cells are collected some time before intensive high-dose treatment and are stored until needed.
  • Allogeneic: this uses stem cells from a close relative or unrelated donor – it is also known as an allograft. A donor transplant is a more complicated procedure than an autologous one and is only carried out in specialist hospitals. Recovery may take several months or longer.

If your child needs a donor transplant, usually parents and siblings are tested first to see if their tissue type is a match. A sibling has a 1 in 4 chance of being a match. If no suitable match is found within the family, a search for a potential match from UK and international stem cell registries will be made.

What happens during a stem cell transplant?

Collecting the stem cells

Before a stem cell transplant, stem cells are collected. These can come from bone marrow, blood or umbilical cord cells. Cells taken from the bone marrow are collected under anaesthetic. This is called a bone marrow harvest. Cells taken from the blood are collected using a machine which is connected to a cannula or central line. A drug is given to trigger the bone marrow to produce extra stem cells which are collected from the circulating (or peripheral) blood. This is called a peripheral blood stem harvest (PBSC harvest). Cells can also be collected from the umbilical cord at the time of a delivery of a baby. Only a limited amount of stem cells can be collected from umbilical cord blood.

The method used depends on which type of transplant your child needs.  

Conditioning treatment

Your child will then be given very high doses of chemotherapy, usually over a few days. Sometimes, radiotherapy to the whole body, known as total body irradiation (TBI), is also given. As well as destroying any remaining cancer cells, the high doses of chemotherapy also destroy the stem cells in the bone marrow. These treatments can have significant side effects but they are needed to destroy the bone marrow effectively, which is important for the new cells to work. 

Receiving the stem cells

After the high dose chemotherapy or total body irradiation (TBI), your child is given the stem cells that were collected before the treatment through a drip. The amount of stem cells needed is calculated based on your child's weight. Your child will be given medicines to precent sickness or an allergic reaction and they will be monitored closely throughout the transfusion. 

The new stem cells make their way into the empty bone marrow and gradually start producing mature blood cells again. This is known as engrafting. It takes some time before the new stem cells start making enough white cells to fight infections. Transfusions of red blood cells and platelets are usually needed until the stem cells produce enough blood cells of their own.

It takes longer for the bone marrow to be fully working after a donor transplant, than after an autologous transplant.

Find out more:

Our booklet 'A guide to donor stem cell transplants' has more information for families and young patients about having a donor (allogeneic) transplant and what to expect.

Play video

Ben's stem cell transplant

This video tells the story of Ben who has a donor transplant, and helps young children to understand what to expect. Also available as a booklet.

Read more about stem cell transplants

Front cover for booklet - Ruby's stem cell harvest and transplant

Ruby's stem cell harvest and transplant

A children's guide to stem cell harvesting and transplant using their own stem cells (autologous transplant). This booklet is designed to help younger children understand their stem cell harvest and transplant, and to explain some of the things that may happen to them.

Ben's stem cell transplant

A children's guide to donor (allogeneic) stem cell transplant. It follows the story of Ben, from his initial visit to the stem cell transplant unit through treatment, managing side effects, exploring emotions and what happens after discharge from hospital.

Front cover for storybook Jess's bone marrow donation

Jess's bone marrow donation

A children's guide to bone marrow donation. A colourful illustrated story book for young children preparing for a bone marrow donation. It follows the story of Jess, who is donating her bone marrow to help her brother, Ben.

Front cover of booklet 'Donating your stem cells to your brother or sister'

Donating your stem cells to your brother or sister

A guide to stem cell (bone marrow) donation for teenagers and young adults and their families. This booklet helps explain about being a stem cell donor for your brother or sister, and describes some of the things that you may experience. It is important that you understand what will happen if you are selected to be a donor.


Information in this section is based on our booklet 'A guide to donor stem cell transplants' and 'Ruby's stem cell harvest and transplant'. Reviewed by Craig Baillie, Stem Cell Transplant Clinical Nurse Specialist, Glasgow, on behalf of the National Paediatric Stem Cell Transplant Nurses Group, and the CCLG Information Advisory Group, comprising parents, survivors and multiprofessional experts in the field of children and young people’s cancer. 

Reviewed: August 2026
Next review due: August 2029